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Woodland strawberry

    The assembly and annotation (v1.1) are as presented by the Shulaev, et. al 2010, The genome of woodland strawberry (Fragaria vesca) , Nature genetics. 43, 109-116. 2010 and downloaded from rosaceae.org . The assembly was constrcuted from 454, Illumina and Sanger reads using the Celera assembler and was assembled by Arthur Delcher at the University of Maryland.

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Genome:      240Mb arranged in 7 chromosomes

Loci :       32,831 loci containing protein-coding transcripts

Transcripts:     32,831 protein-coding transcripts

Reference Publication

  Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, Liu B, Silva H, Meisel L, Adato A, Filichkin SA, Troggio M, Viola R, Ashman TL, Wang H, Dharmawardhana P, Elser J, Raja R, Priest HD, Bryant DW, Fox SE, Givan SA, Wilhelm LJ, Naithani S, Christoffels A, Salama DY, Carter J, Lopez Girona E, Zdepski A, Wang W, Kerstetter RA, Schwab W, Korban SS, Davik J, Monfort A, Denoyes-Rothan B, Arus P, Mittler R, Flinn B, Aharoni A, Bennetzen JL, Salzberg SL, Dickerman AW, Velasco R, Borodovsky M, Veilleux RE, Folta KM, The genome of woodland strawberry (Fragaria vesca)., Nature genetics. 2011 Feb ; 43 2 109-16